Publications

2025

Quantifying age and spatial variations of bone marrow elasticity with non-contact optical coherence elastography
Amandeep Singh, Manmohan Singh, Salavat R. Aglyamov, David Mayerich, Kirill Larin
Journal of Biomedical Optics (accepted), (2025) [DOI]

Segmentation and Modeling of Large-Scale Microvascular Networks: A Survey
Helya Goharbavang, Artem Ashitkov, Athira Pillai, Joshua D. Wythe, Guoning Chen, David Mayerich
Frontiers in Bioinformatics (accepted), (2025) [DOI]

Closed-Form GPU-Accelerated Tensor Voting With Refinement
Helya Goharbavang, Omar Baig, Guoning Chen, David Mayerich
IEEE International Symposium on Biomedical Imaging (ISBI) , (2025) [DOI]

Segmentation of Microvascular Networks Embedded in Gigavoxel 3D Images Using RSF Level Sets With OpenVDB
Meher Niger, Wilna Moree, Maximillian Bluhm, Jason Eriksen, Guonong Chen, David Mayerich
IEEE International Symposium on Biomedical Imaging (ISBI) , (2025) [DOI]

Fast Photostable Expansion Microscopy Using QDots and Deconvolution
Loku Gunawardhana, Wilna Moree, Jiaming Guo, Camille Artur, Tasha Womack, Jason Eriksen, David Mayerich
PLoS ONE 20(6): e0325155, (2025) [DOI]

Multimodal optical coherence tomography and two-photon light-sheet fluorescence microscopy for embryo imaging
Md Mobarak Karim, Ruijiao Sun, Behzad Khajavi, Manmohan Singh, Yogeshwari S. Ambekar, Alexander W. Schill, David Mayerich, Kirill Larin
Journal of Biomedical Optics 30(6), 060501, (2025) [DOI]

Enabling Chemical Holography: A Comprehensive Framework and Implementation
Shihao Ran, David Mayerich, Rohith Reddy
IEEE Photonics Journal 17(3), (2025) [DOI]

2024

Rapid hyperspectral photothermal mid-infrared spectroscopic imaging from sparse data for gynecologic cancer tissue subtyping
Reza Reihanisaransari, Chalapathi Gajjela, Xinyu Wu, Ragib Ishrak, Sara Corvigno, Zhong Yanping, Jinsong Liu, Anil Sood, David Mayerich, ebastian Berisha, Rohith Reddy
Analytical Chemistry , (2024) [DOI]

Cervical cancer tissue analysis using photothermal mid-infrared spectroscopic imaging
Reza Reihanisaransari, Chalapathi Charan Gajjela, Xinyu Wu, Ragib Ishrak, Yanping Zhong, David Mayerich, Sebastian Berisha, Rohith Reddy
Chemical & Biomedical Imaging , (2024) [DOI]

2023

Leveraging mid-infrared spectroscopic imaging and deep learning for tissue subtype classification in ovarian cancer
Chalapathi Gajjela, Matthew Brun, Rupali Mankar, Noah Kennedy, Sara Corvigno, Yanping Zhong, Jinsong Liu, Anil Sood, David Mayerich, Sebastian Berisha, Rohith Reddy
Analyst 148: 2699-2708, (2023) [DOI]

2022

Computational Insights on Coronary Artery Function
David Mayerich, Joshua Wythe
Nature Cardiovascular Research , (2022) [DOI]

Polarization sensitive photothermal mid-infrared spectroscopic imaging of human bone marrow tissue
Rupali Mankar, Chalapathi Charan Gajjela, Carlos E. Bueso-Ramos, C. Cameron Yin, David Mayerich, Rohith K. Reddy
Applied Spectroscopy , (2022) [DOI]

Prostacyclin promotes degenerative pathology in a model of Alzheimer’s disease
Tasha Womack, Craig Vollert, Odochi Nwoko, Monika Schmitt, Saghi Montazari, Tina Beckett, David Mayerich, Paul Murphy, Jason Eriksen
Frontiers in Cellular Neuroscience , (2022) [DOI]

Adaptive Compressive Sampling for Mid-Infrared Spectroscopic Imaging
Mahsa Lotfollahi, Nguyen Tran, Chalapathi Gajjela, Sebastian Berisha, Zhu Han, David Mayerich, Rohith Reddy
IEEE International Conference on Image Processing (ICIP) , (2022) [DOI]

2021

Probe the Localized Electrochemical Environment Effects and Electrode Reaction Dynamics for Metal Batteries using In Situ 3D Microscopy
Guangxia Feng, Jiaming Guo, Huajun Tian, Zhao Li, Yaping Shi, David Mayerich, Yang Yang, Xiaonan Shan
Advanced Energy Materials , (2021) [DOI]

Multimodal high-resolution embryonic imaging with light sheet fluorescence microscopy and optical coherence tomography
Behzad Khajavi, Ruijiao Sun, Harshdeep Singh Chawla, Henry H. Le, Manmohan Singh, Alexander W. Schill, Mary E. Dickinson, David Mayerich, Kirill V. Larin
Optics Letters , (2021) [DOI]

Multi-Modal Image Sharpening in Fourier Transform Infrared (FTIR) Microscopy
Rupali Mankar, Chalapathi Gajjela, Farideh Foroozandeh, Saurabh Prasad, David Mayerich, Rohith Reddy
Analyst , (2021) [DOI]

2020

Artificial intelligence and machine learning in nephropathology
Jan U. Becker, David Mayerich, Jonathan Barratt, Peter Boor, Chandra Mohan, Hien V. Nguyen, Badrinath Roysam
Kidney International 9(1):65-75, (2020) [DOI]

Spontaneous Formation of 2D/3D Heterostructures on the Edges of 2D Ruddlesden-Popper Hybrid Perovskite Crystals
Zhaojun Qin, Shenyu Dai, Chalapathi Charan Gajjela, Chong Wang, Viktor Hadjiev, Guang Yang, Jiabing Li, Xin Zhong, Zhongjia Tang, Yan Yao, Arnold Guloy, Rohith Reddy, David Mayerich, Liangzi Deng, Qingkai Yu, Guoying Feng, Hector Calderon, Francisco Hernandez, Zhiming Wang, Jiming Bao
Chemistry of Materials , (2020) [DOI]

Photoluminescence Mapping and Time-Domain Thermo-Photoluminescence for Rapid Imaging and Measurement of Thermal Conductivity of Boron Arsenide
Shuai Yue, Geethal Amila Gamage, Mohammadjavad Mohebinia, David Mayerich, Vishal Talari, Yu Deng, Fei Tian, Shen-Yu Dai, Haoran Sun, Viktor Hadjiev, Wei Zhang, Guoying Geng, Jonathan Hu, Dong Liu, Zhiming Want, Zhifeng Ren, Jiming Bao
Materials Today Physics 13:100194, (2020) [DOI]

Multiplex protein-specific microscopy with ultraviolet surface excitation
Jiaming Guo, Camille Artur, Tasha Womack, Jason Eriksen, David Mayerich
Biomedical Optics Express 11(1), 99-108, (2020) [DOI]

Segmenting Continuous but Sparsely-Labeled Structures in Super-Resolution Microscopy Using Perceptual Grouping
Jiabing Li, Camille Artur, Jason Eriksen, Badrinath Roysam, David Mayerich
Lecture Notes in Computer Science , (2020) [DOI]

Cellular/Vascular Reconstruction using a Deep CNN for Semantic Image Preprocessing and Explicit Segmentation
Leila Saadatifard, Aryan Mobiny, Pavel Govyadinov, Hien Van Nguyen, David Mayerich
Lecture Notes in Computer Science , (2020) [DOI]

2019

Graph-assisted Visualization of Microvascular Networks
Pavel Govyadinov, Tasha Womack, Jason Eriksen, David Mayerich, Guoning Chen
IEEE Visualization (IEEE Vis) Short Paper , (2019) [DOI]

Automated osteosclerosis grading of clinical biopsies using infrared spectroscopic imaging
Rupali Mankar, Carlos Bueso-Ramos, C. Cameron Yin, Juliana E. Hidalgo-Lopez, Sebastian Berisha, Mustafa Kansiz, David Mayerich
Analytical Chemistry 92(1), 749-757, (2019) [DOI]

Three-Dimensional Microscopy by Milling with Ultraviolet Excitation
Jiaming Guo, Camille Artur, Jason Eriksen, David Mayerich
Nature Scientific Reports 9:14578, (2019) [DOI]

Three-Dimensional GPU-Accelerated Active Contours for Automated Localization of Cells in Large Images
Mahsa Lotfollahi, Sebastian Berisha, Leila Saadatifard, Laura Montier, Jokubas Ziburkus, David Mayerich
PLoS ONE 14(6):e0215843, (2019) [DOI]

Digital Staining of High-Definition Fourier Transform Infrared (FT-IR) Images Using Deep Learning
Mahsa Lotfollahi, Sebastian Berisha, Davar Daeinejad, David Mayerich
Applied Spectroscopy 73(5):556–564, (2019) [DOI]

Deep learning for FTIR histology: leveraging spatial and spectral features with convolutional neural networks
Sebastian Berisha, Mahsa Lotfollahi, Jahandar Jahanipour, Ilker Gurcan, Michael Walsh, Rohit Bhargava, Hien Van Nguyen, David Mayerich
Analyst 144:1642-1653, (2019) [DOI]

Accurate flow in augmented networks (AFAN): An approach to generating three-dimensional biomimetic microfluidic networks with controlled flow
Jiaming Guo, Keely A. Keller, Pavel Govyadinov, Paul Ruchhoeft, John. H. Slater, David Mayerich
Analytical Methods 11:8-16, (2019) [DOI]

TIMING 2.0: High-throughput single-cell profiling of dynamic cell-cell interactions by time-lapse imaging microscopy in nanowell gids
Hengyang Lu, Jiabing Li, Melisa Martinez Paniagua, Irfan Bandey, Amit Amritkar, Harjeet Singh, David Mayerich, Navin Varadarajan, Badrinath Roysam
Bioinformatics 35(4):706-708, (2019) [DOI]

Robust Tracing and Visualization of Heterogeneous Microvascular Networks
Pavel Govyadinov, Tasha Womack, Jason Eriksen, Guoning Chen, David Mayerich
IEEE Transactions on Visualization and Computer Graphics 25(4):1760-1773, (2019) [DOI]

2018

Planar Alignment of Graphene Sheets by a Rotating Magnetic Field for Full Exploitation of Graphene as a 2D Material
Feng Lin, Guang Yang, Chao Niu, Yanan Wang, Zhuan Zhu, Haokun Luo, Chong Dai, Yandi Hu, Xufeng Zhou, Zhaoping Liu, Jonathan Hu, Zhiming Wang, David Mayerich, Jiming Bao
Advanced Functional Materials 28(46), (2018) [DOI]

Application of Vibrational Spectroscopy and Imaging to Point-of-Care Medicine: A Review
Susanne Pahlow, Karina Weber, Jurgen Popp, Bayden R. Wood, Kamila Kochan, Anja Ruther, David Perez-Guaita, Philip Heraud, Nick Stone, Alex Dudgeon, Ben Gardner, Rohith Reddy, David Mayerich, Rohit Bhargava
Applied Spectroscopy 72(1_suppl):52-84, (2018) [DOI]

Robust Cell Detection for Large-Scale 3D Microscopy Using GPU-Accelerated Iterative Voting
Leila Saadatifard, Louise C. Abbott, Laura Montier, Jokubas Ziburkus, **David Mayerich
Frontiers in Neuroanatomy 12:28, (2018) [DOI]

Mitigating Fringing in Discrete Frequency Infrared Imaging Using Time-Delayed Integration
Shihao Ran, Sebastian Berisha, Rupali Mankar, Wei-Chuan Shih, David Mayerich
Biomedical Optics Express 9(2): 832-843, (2018) [DOI]

Selecting optimal features from Fourier transform infrared spectroscopy for discrete-frequency imaging
Rupali Mankar, Michael Walsh, Rohit Bhargava, Saurabh Prasad, David Mayerich
Analyst 143:1147-1156, (2018) [DOI]

Plasmonic nanoparticle-based expansion microscopy with surface-enhanced Raman and dark-field spectroscopic imaging
Camille Artur, Tasha Womack, Fusheng Zhao, Jason Eriksen, David Mayerich, Wei-Chuan Shih
Biomedical Optics Express 9(2): 603-615, (2018) [DOI]

2017

Comparison and combination of rotational imaging optical coherence tomography and selective plane illumination microscopy for embryonic study
Chen Wu, Henry Le, Shihao Ran, Manmohan Singh, Irina V. Larina, David Mayerich, Mary E. Dickinson, Kirill V. Larin
Biomedical Optics Express 8(10): 4629-4639, (2017) [DOI]

BIM-Sim: Interactive Simulation of Broadband Imaging Using Mie Theory
Sebastian Berisha, Thomas van Dijk, Rohit Bhargava, P. Scott Carney, David Mayerich
Frontiers in Physics: Optics and Biophotonics 5, (2017) [DOI]

SIproc: an open-source biomedical data processing platform for large hyperspectral images
Sebastian Berisha, Shengyuan C., Sam Saki, Davar Daeinejad, Ziqi He, Rupali Mankar, David Mayerich
Analyst 142(8):1350-1357, (2017) [DOI]

Image-Guided, Laser-Based Fabrication of Vascular-Derived Microfluidic Networks
Keely Heintz, David Mayerich, John Slater
Journal of Visualized Experiments (119), e55101, (2017) [DOI]

2016

2015

Compositional prior information in computed infrared spectroscopic imaging
Bradley Deutsch, Rohith Reddy, David Mayerich, R. Bhargava, P.S. Carney
Journal of the Optical Society of America A 32(6): 1126-1131, (2015) [DOI]

High Definition Infrared Spectroscopic Imaging for Lymph Node Histopathology
L. Suzanne Leslie, Tomas Wrobel, David Mayerich, Bindra, S., Emmadi, R., Rohit Bhargava
PloS ONE , (2015) [DOI]

Stain-less Staining for Computed Histopathology
David Mayerich, Michael Walsh, Andre Kadjacsy-Balla, Partha Ray, Stephen Hewitt, Rohit Bhargava
Innovation and Emerging Technologies 3(1): 27-31, (2015) [DOI]

2014

On the importance of image formation optics in the design of infrared spectroscopic imaging systems
David Mayerich, Thomas van Dijk, Michael Walsh, Matthew Schulmerich, P. Scott Carney, Rohit Bhargava
Analyst 139, 16, 4031–4036, (2014) [DOI]